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On the 26th of April 2022, the European Proteomics Association (EuPA) and European Proteomics Infrastructure Consortium – providing access (EPIC-XS) jointly organized an online workshop and seminar on computational proteomics, hosted by CompOmics.



Tuesday, 26th of April 2022 13h00 – 18h00 CET


Chair: Sven Degroeve
13:00 – 15:00 Using ionbot for highly reliable and sensitive open modification discovery – Ralf Gabriels & Robbin Bouwmeester, VIB / Ghent University
15:00 – 15:20 Coffee break


15:20 – 15:25 Welcome by the chairs

Session 1: A deeper look at the proteome at the smallest and largest scales
Chair: Harald Barsnes
15:25 – 15:55 Bioinformatics advances for top-down/intact proteomics – Kyowon Jeong, University of Tübingen
15:55 – 16:25 MS²Rescore for improved (immuno-)peptidomics – Arthur Declercq, VIB / Ghent University
16:25 – 16:35 Q&A with the speakers moderated by Lennart Martens

Session 2: Advanced interpretation and re-use of proteomics data
Chair: Lennart Martens
16:45 – 17:15 FAIR data fosters proteomic research exemplified by ProteomicsDB and Prosit – Mathias Wilhelm, Technical University München
17:15 – 17:45 PRIDE data reuse – Juan Antonio Vizcaìno
17:45 – 18:00 Q&A with the speakers, moderated by Harald Barsnes


Lennart Martens, VIB / Ghent University, Belgium

Harald Barsnes, University of Bergen, Norway

The European Proteomics Association (EuPA) is the federation of European national proteomics societies. EuPA was founded in 2005 and is a federation of 22 European national proteomics societies. It has been established to coordinate and integrate national initiatives within the proteomics field. The main objectives are to strengthen and promote fundamental research and applications, as well as education and training in all areas of proteomics throughout Europe.

The European Proteomics Infrastructure Consortium providing Access (EPIC-XS) consists of a unified network of experienced access providers and research groups who share a common goal: to facilitate the development and sustainability of proteomics exploration to all life science researchers within the European Union. The initiative is coordinated by the Utrecht University.

EPIC-XS project has received funding from the European Union’s Horizon 2020 research and innovation programme under Grant Agreement No 823839.